This article investigates and compares three approaches to link prediction in colaboration networks, namely, an ERGM (Exponential Random Graph Model; Robins et al. 2007), a GCN (Graph Convolutional Network; Kipf and Welling 2017), and a Word2Vec+MLP model (Word2Vec model combined with a multilayer neural network; Mikolov et al. 2013a and Goodfellow et al. 2016). The ERGM, grounded in statistical methods, is employed to capture general structural patterns within the network, while the GCN and Word2Vec+MLP models leverage deep learning techniques to learn adaptive structural representations of nodes and their relationships. The predictive performance of the models is assessed through extensive simulation exercises using cross-validation, with metrics based on the receiver operating characteristic curve. The results clearly show the superiority of machine learning approaches in link prediction, particularly in large networks, where traditional models such as ERGM exhibit limitations in scalability and the ability to capture inherent complexities. These findings highlight the potential benefits of integrating statistical modeling techniques with deep learning methods to analyze complex networks, providing a more robust and effective framework for future research in this field.

Accurately modeling the relationships between skills is a crucial part of human resources processes such as recruitment and employee development. Yet, no benchmarks exist to evaluate such methods directly. We construct and release SkillMatch, a benchmark for the task of skill relatedness, based on expert knowledge mining from millions of job ads. Additionally, we propose a scalable self-supervised learning technique to adapt a Sentence-BERT model based on skill co-occurrence in job ads. This new method greatly surpasses traditional models for skill relatedness as measured on SkillMatch. By releasing SkillMatch publicly, we aim to contribute a foundation for research towards increased accuracy and transparency of skill-based recommendation systems.

Natural Language Processing (NLP), a cornerstone field within artificial intelligence, has been increasingly utilized in the field of materials science literature. Our study conducts a reproducibility analysis of two pioneering works within this domain: "Machine-learned and codified synthesis parameters of oxide materials" by Kim et al., and "Unsupervised word embeddings capture latent knowledge from materials science literature" by Tshitoyan et al. We aim to comprehend these studies from a reproducibility perspective, acknowledging their significant influence on the field of materials informatics, rather than critiquing them. Our study indicates that both papers offered thorough workflows, tidy and well-documented codebases, and clear guidance for model evaluation. This makes it easier to replicate their results successfully and partially reproduce their findings. In doing so, they set commendable standards for future materials science publications to aspire to. However, our analysis also highlights areas for improvement such as to provide access to training data where copyright restrictions permit, more transparency on model architecture and the training process, and specifications of software dependency versions. We also cross-compare the word embedding models between papers, and find that some key differences in reproducibility and cross-compatibility are attributable to design choices outside the bounds of the models themselves. In summary, our study appreciates the benchmark set by these seminal papers while advocating for further enhancements in research reproducibility practices in the field of NLP for materials science. This balance of understanding and continuous improvement will ultimately propel the intersecting domains of NLP and materials science literature into a future of exciting discoveries.

The flow of ideas has been extensively studied by physicists, psychologists, and machine learning engineers. This paper adopts specific tools from microrheology to investigate the similarity-based flow of ideas. We introduce a random walker in word embeddings and study its behavior. Such similarity-mediated random walks through the embedding space show signatures of anomalous diffusion commonly observed in complex structured systems such as biological cells and complex fluids. The paper concludes by proposing the application of popular tools employed in the study of random walks and diffusion of particles under Brownian motion to assess quantitatively the incorporation of diverse ideas in a document. Overall, this paper presents a self-referenced method combining microrheology and machine learning concepts to explore the meandering tendencies of language models and their potential association with creativity.

With Company2Vec, the paper proposes a novel application in representation learning. The model analyzes business activities from unstructured company website data using Word2Vec and dimensionality reduction. Company2Vec maintains semantic language structures and thus creates efficient company embeddings in fine-granular industries. These semantic embeddings can be used for various applications in banking. Direct relations between companies and words allow semantic business analytics (e.g. top-n words for a company). Furthermore, industry prediction is presented as a supervised learning application and evaluation method. The vectorized structure of the embeddings allows measuring companies similarities with the cosine distance. Company2Vec hence offers a more fine-grained comparison of companies than the standard industry labels (NACE). This property is relevant for unsupervised learning tasks, such as clustering. An alternative industry segmentation is shown with k-means clustering on the company embeddings. Finally, this paper proposes three algorithms for (1) firm-centric, (2) industry-centric and (3) portfolio-centric peer-firm identification.

The existence of trace links between artifacts of the software development life cycle can improve the efficiency of many activities during software development, maintenance and operations. Unfortunately, the creation and maintenance of trace links is time-consuming and error-prone. Research efforts have been spent to automatically compute trace links and lately gained momentum, e.g., due to the availability of powerful tools in the area of natural language processing. In this paper, we report on some observations that we made during studying non-linear similarity measures for computing trace links. We argue, that taking a geometric viewpoint on semantic similarity can be helpful for future traceability research. We evaluated our observations on a dataset of four open source projects and two industrial projects. We furthermore point out that our findings are more general and can build the basis for other information retrieval problems as well.

Ribozymes, RNA molecules with distinct 3D structures and catalytic activity, have widespread applications in synthetic biology and therapeutics. However, relatively little research has focused on leveraging deep learning to enhance our understanding of ribozymes. This study implements Word2Vec, an unsupervised learning technique for natural language processing, to learn ribozyme embeddings. Ribo2Vec was trained on over 9,000 diverse ribozymes, learning to map sequences to 128 and 256-dimensional vector spaces. Using Ribo2Vec, sequence embeddings for five classes of ribozymes (hatchet, pistol, hairpin, hovlinc, and twister sister) were calculated. Principal component analysis demonstrated the ability of these embeddings to distinguish between ribozyme classes. Furthermore, a simple SVM classifier trained on ribozyme embeddings showed promising results in accurately classifying ribozyme types. Our results suggest that the embedding vectors contained meaningful information about ribozymes. Interestingly, 256-dimensional embeddings behaved similarly to 128-dimensional embeddings, suggesting that a lower dimension vector space is generally sufficient to capture ribozyme features. This approach demonstrates the potential of Word2Vec for bioinformatics, opening new avenues for ribozyme research. Future research includes using a Transformer-based method to learn RNA embeddings, which can capture long-range interactions between nucleotides.

In the previous articles, we have discussed what word embeddings are and how to train them from scratch or using word2vec models. This article is an intuitive guide to understanding Glove Embeddings which is a powerful word vector learning technique. We focus on why GloVe is better than word2vec in some ways and arrive at the cost function of GloVe used for training word vectors. To recap, word embeddings transform words into a vector space where similar words are placed together and different words wide off. Word2Vec models only consider the local (context, target) words for training word vectors, unlike GloVe which does not rely on local statistics or local context of words but includes global statistics to train word vectors.

The past few years has seen the application of machine learning utilised in the exploration of new materials. As in many fields of research - the vast majority of knowledge is published as text, which poses challenges in either a consolidated or statistical analysis across studies and reports. Such challenges include the inability to extract quantitative information, and in accessing the breadth of non-numerical information. To address this issue, the application of natural language processing (NLP) has been explored in several studies to date. In NLP, assignment of high-dimensional vectors, known as embeddings, to passages of text preserves the syntactic and semantic relationship between words. Embeddings rely on machine learning algorithms and in the present work, we have employed the Word2Vec model, previously explored by others, and the BERT model - applying them towards a unique challenge in materials engineering. That challenge is the search for chromate replacements in the field of corrosion protection. From a database of over 80 million records, a down-selection of 5990 papers focused on the topic of corrosion protection were examined using NLP. This study demonstrates it is possible to extract knowledge from the automated interpretation of the scientific literature and achieve expert human level insights.

Thanks to rapid development of artificial intelligence technology in recent years, the current artificial intelligence technology is contributing to many part of society. Education, environment, medical care, military, tourism, economy, politics, etc. are having a very large impact on society as a whole. For example, in the field of education, there is an artificial intelligence tutoring system that automatically assigns tutors based on student's level. In the field of economics, there are quantitative investment methods that automatically analyze large amounts of data to find investment laws to create investment models or predict changes in financial markets. As such, artificial intelligence technology is being used in various fields. So, it is very important to know exactly what factors have an important influence on each field of artificial intelligence technology and how the relationship between each field is connected. Therefore, it is necessary to analyze artificial intelligence technology in each field. In this paper, we analyze patent documents related to artificial intelligence technology. We propose a method for keyword analysis within factors using artificial intelligence patent data sets for artificial intelligence technology analysis. This is a model that relies on feature engineering based on deep learning model named KeyBERT, and using vector space model. A case study of collecting and analyzing artificial intelligence patent data was conducted to show how the proposed model can be applied to real world problems.